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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">epidemiology</journal-id><journal-title-group><journal-title xml:lang="ru">Эпидемиология и Вакцинопрофилактика</journal-title><trans-title-group xml:lang="en"><trans-title>Epidemiology and Vaccinal Prevention</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">2073-3046</issn><issn pub-type="epub">2619-0494</issn><publisher><publisher-name>«Numicom» LLC</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.31631/2073-3046-2023-22-4-24-34</article-id><article-id custom-type="elpub" pub-id-type="custom">epidemiology-1849</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ОРИГИНАЛЬНЫЕ СТАТЬИ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>ORIGINAL ARTICLES</subject></subj-group></article-categories><title-group><article-title>Молекулярно-эпидемиологический мониторинг возбудителей природно-очаговых инфекций в Ставропольском крае в 2016–2021 годах</article-title><trans-title-group xml:lang="en"><trans-title>Molecular Surveillance of Natural Focal Diseases Causative Agents in the Stavropol Territory in 2016–2021</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1893-6195</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Чекрыгина</surname><given-names>Е. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Chekrygina</surname><given-names>E. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Елена Владимировна Чекрыгина – ассистент кафедры микробиологии</p><p>Ставрополь</p></bio><bio xml:lang="en"><p>Elena V. Chekrygina – assistant of the Department of Microbiology</p><p>Stavropol</p></bio><email xlink:type="simple">Chekrygina-e@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-5554-5882</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Волынкина</surname><given-names>А. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Volynkina</surname><given-names>A. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Анна Сергеевна Волынкина – заведующая лабораторией диагностики вирусных инфекций</p><p>355000, г. Ставрополь, ул. Советская, д.13-15</p></bio><bio xml:lang="en"><p>Anna S. Volynkina – Head of the Viral Infections Diagnostic Laboratory</p><p>13-15 Sovjetskaya str., Stavropol, 355000</p></bio><email xlink:type="simple">volyn444@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1911-9197</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Зайцева</surname><given-names>О. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Zaitseva</surname><given-names>O. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Ольга Александровна Зайцева – младший научный сотрудник лаборатории диагностики бактериальных инфекций</p><p>Ставрополь</p></bio><bio xml:lang="en"><p>Olga A. Zaitseva – junior researcher, Bacterial Infections Diagnostic Laboratory</p><p>Stavropol</p></bio><email xlink:type="simple">helga220886@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-0025-1793</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Лисицкая</surname><given-names>Я. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Lisitskaya</surname><given-names>Ya. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Яна Владимировна Лисицкая – старший научный сотрудник лаборатории диагностики вирусных инфекций</p><p>Ставрополь</p></bio><bio xml:lang="en"><p>Yana V. Lisitskaya – senior researcher, Viral Infections Diagnostic Laboratory</p><p>Stavropol</p></bio><email xlink:type="simple">yanich.ka@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-8723-8489</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Тищенко</surname><given-names>И. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Tishchenko</surname><given-names>I. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Илья Викторович Тищенко – младший научный сотрудник</p><p>Ставрополь</p></bio><bio xml:lang="en"><p>Ilya V. Tishchenko – junior researcher, Viral Infections Diagnostic Laboratory</p><p>Stavropol</p></bio><email xlink:type="simple">il26tish@gmail.com</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-9044-1808</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Гнусарева</surname><given-names>О. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Gnusareva</surname><given-names>O. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Ольга Александровна Гнусарева – биолог лаборатории диагностики бактериальных инфекций</p><p>Ставрополь</p></bio><bio xml:lang="en"><p>Olga A. Gnusareva – biologist, Bacterial Infections Diagnostic Laboratory</p><p>Stavropol</p></bio><email xlink:type="simple">gnusarevao@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-0979-433X</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Ростовцева</surname><given-names>Д. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Rostovtseva</surname><given-names>D. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Дарья Владимировна Ростовцева – биолог</p><p>Ставрополь</p></bio><bio xml:lang="en"><p>Daria V. Rostovtseva – biologist, Bacterial Infections Diagnostic Laboratory</p><p>Stavropol</p></bio><email xlink:type="simple">OrochimaruLavi@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-7580-0991</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Василенко</surname><given-names>Е. И.</given-names></name><name name-style="western" xml:lang="en"><surname>Vasilenko</surname><given-names>E. I.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Екатерина Игоревна Василенко – младший научный сотрудник</p><p>Ставрополь</p></bio><bio xml:lang="en"><p>Ekaterina I. Vasilenko – junior researcher, Viral Infections Diagnostic Laboratory</p><p>Stavropol</p></bio><email xlink:type="simple">simecheva@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-6196-2308</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Ткаченко</surname><given-names>Н. О.</given-names></name><name name-style="western" xml:lang="en"><surname>Tkachenko</surname><given-names>N. O.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Наталья Олеговна Ткаченко – младший научный сотрудник</p><p>Ставрополь</p><p> </p></bio><bio xml:lang="en"><p>Natalya O. Tkachenko – junior researcher, Viral Infections Diagnostic Laboratory</p><p>Stavropol</p></bio><email xlink:type="simple">nataliatkachenko1811@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-8882-6477</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Васильева</surname><given-names>О. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Vasilyeva</surname><given-names>O. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Оксана Васильевна Васильева – заведующая лабораторией диагностики бактериальных инфекций</p><p>Ставрополь</p></bio><bio xml:lang="en"><p>Oksana V. Vasilyeva – Head of the Bacterial Infections Diagnostic Laboratory</p><p>Stavropol</p></bio><email xlink:type="simple">ksusha.vasilieva@gmail.com</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-4453-6144</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Пурмак</surname><given-names>К. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Purmak</surname><given-names>K. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Кристина Александровна Пурмак – заведующая отделением мониторинга природно-очаговых и особо опасных инфекций</p><p>Ставрополь</p></bio><bio xml:lang="en"><p>Kristina A. Purmak – head of the Department of monitoring of natural focal and especially dangerous infections</p><p>Stavropol</p></bio><email xlink:type="simple">kristypyrmak.ru@mail.ru</email><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-5952-1458</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Соломащенко</surname><given-names>Н. И.</given-names></name><name name-style="western" xml:lang="en"><surname>Solomashchenko</surname><given-names>N. I.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Наталья Ивановна Соломащенко – главный врач</p><p>Ставрополь</p></bio><bio xml:lang="en"><p>Natalia I. Solomashchenko – chief medical officer</p><p>Stavropol</p></bio><email xlink:type="simple">sni@fbuz26.ru</email><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-9362-3949</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Куличенко</surname><given-names>А. Н.</given-names></name><name name-style="western" xml:lang="en"><surname>Kulichenko</surname><given-names>A. N.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Александр Николаевич Куличенко – директор института</p><p>Ставрополь</p></bio><bio xml:lang="en"><p>Alexander N. Kulichenko – Director of the Institute</p><p>Stavropol</p></bio><email xlink:type="simple">kulichenko_an@list.ru</email><xref ref-type="aff" rid="aff-2"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>ФГБОУ ВО «Ставропольский государственный медицинский университет» МЗ РФ</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Stavropol State Medical University</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>ФКУЗ Ставропольский противочумный институт Роспотребнадзора</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Stavropol Research Anti-Plague Institute</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-3"><aff xml:lang="ru"><institution>ФБУЗ «Центр гигиены и эпидемиологии в Ставропольском крае» Роспотребнадзора</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Center for Hygiene and Epidemiology in the Stavropol kray</institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2023</year></pub-date><pub-date pub-type="epub"><day>20</day><month>09</month><year>2023</year></pub-date><volume>22</volume><issue>4</issue><fpage>24</fpage><lpage>34</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Чекрыгина Е.В., Волынкина А.С., Зайцева О.А., Лисицкая Я.В., Тищенко И.В., Гнусарева О.А., Ростовцева Д.В., Василенко Е.И., Ткаченко Н.О., Васильева О.В., Пурмак К.А., Соломащенко Н.И., Куличенко А.Н., 2023</copyright-statement><copyright-year>2023</copyright-year><copyright-holder xml:lang="ru">Чекрыгина Е.В., Волынкина А.С., Зайцева О.А., Лисицкая Я.В., Тищенко И.В., Гнусарева О.А., Ростовцева Д.В., Василенко Е.И., Ткаченко Н.О., Васильева О.В., Пурмак К.А., Соломащенко Н.И., Куличенко А.Н.</copyright-holder><copyright-holder xml:lang="en">Chekrygina E.V., Volynkina A.S., Zaitseva O.A., Lisitskaya Y.V., Tishchenko I.V., Gnusareva O.A., Rostovtseva D.V., Vasilenko E.I., Tkachenko N.O., Vasilyeva O.V., Purmak K.A., Solomashchenko N.I., Kulichenko A.N.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://www.epidemvac.ru/jour/article/view/1849">https://www.epidemvac.ru/jour/article/view/1849</self-uri><abstract><sec><title>Актуальность</title><p>Актуальность. Молекулярно-эпидемиологический мониторинг, направленный на получение актуальной информации о генетических вариантах возбудителей, циркулирующих в изучаемом регионе, является важным элементом эпидемиологического надзора за природно-очаговыми инфекциями (ПОИ). Ставропольский край – один из основных рекреационных регионов РФ, эндемичен по ряду ПОИ, в т.ч.: Крымской геморрагической лихорадке (КГЛ), лихорадке Ку, туляремии, иксодовому клещевому боррелиозу и др.</p></sec><sec><title>Цель</title><p>Цель. Геномное профилирование возбудителей ПОИ, циркулировавших в Ставропольском крае в 2016–2021 гг.</p></sec><sec><title>Материалы и методы</title><p>Материалы и методы. В качестве материала для исследования использовали штаммы микроорганизмов и образцы полевого и клинического материала, содержащие геномную ДНК/РНК возбудителей. Генетическое типирование штаммов и изолятов НК возбудителей ПОИ проводили методами MLVA (Francisella tularensis и Coxiella burnetii) и секвенирования фрагментов генома (вирусов лихорадок Крымской-Конго геморрагической, Западного Нила, ортохантавирусов, Borrelia burgdorferii s.l., Ricckettsia sp.).</p></sec><sec><title>Результаты и обсуждение</title><p>Результаты и обсуждение. В результате молекулярно-генетического типирования на территории СК в 2016–2021 гг. установлена циркуляция: штаммов F. tularensis (генетические подгруппы B.I, B.III, B.VI; генетически идентичных штаммов C. burnetii (VNTR-профиль 4-6-6-4-7-6-3-12-3-11); риккетсий относящихся к 5 видам (R. raoultii, R. aeschlimannii, R. slovaca, R. massiliae, R. helvetica); боррелий (B. afzelii, B. garinii, B. miyamotoi, B. bavariensis, B. lusitaniae, B. Valaisiana); РНК-изолятов: вируса Крымской-Конго геморрагической лихорадки генетических линий Европа-1 и Европа-3; ортохантавирусов Тула, вируса Западного Нила 2 генотипа. Впервые на территории Ставропольского края в пробах лёгкого насекомоядных выявлены РНК-изоляты ортохантавируса, генетически близкого к вирусу Camp Ripley (RLPV).</p></sec><sec><title>Выводы</title><p>Выводы. Получены новые данные о распространении генетических вариантов возбудителей ПОИ, в т.ч. на территории рекреационных зон, свидетельствующие, свидетельствующие об относительной стабильности природных очагов ПОИ в регионе в 2016–2021 гг. </p></sec></abstract><trans-abstract xml:lang="en"><sec><title>Relevance</title><p>Relevance. Molecular surveillance, aimed at obtaining up-to-date information on the genetic variants of pathogens circulating in the studied region, is an important element of the surveillance of natural focal infections (NFIs). The Stavropol Territory is one of the main recreational regions in the Russian Federation; it is endemic for a number of NFIs, including: Crimean-Congo hemorrhagic fever (CCHF), Q fever, tularemia, Lime disease, etc.</p><p>The aim of the work is is genomic profiling of NFIs causative agents circulating in the Stavropol Territory in 2016-2021.</p></sec><sec><title>Materials and methods</title><p>Materials and methods. Microbial strains and samples of field and clinical material containing genomic DNA/RNA of pathogens were used as material for the study. Genetic typing of strains and isolates of DNA/RNA NFIs causative agents was performed by MLVA (Francisella tularensis and Coxiella burnetii) and genome fragment sequencing (Crimean-Congo hemorrhagic fever virus, West Nile virus, orthohantaviruses, Borrelia burgdorferii s.l., Ricckettsia sp.).</p></sec><sec><title>Results</title><p>Results. As a result of molecular genetic typing in the ST in 2016-2021 confirmed circulation of strains of F. tularensis of genetic subgroups B.I, B.III, B.VI, genetically identical strains of C. burnetii (VNTR-профиль 4-6-6-4-7-6-3-12-3-11), rickettsia belonging to 5 species: R. raoultii, R. aeschlimannii, R. slovaca, R. massiliae, R. helvetica , Borrelia belonging to the species: B. afzelii, B. garinii, B. miyamotoi, B. bavariensis, B. lusitaniae, B. valaisiana, RNA isolates of the CCHF virus of the Europe-1 and Europe-3 genetic lines, Tula orthohantaviruses, West Nile virus genotype 2. For the first time on the territory of the CT, in insectivore lung samples, RNA isolates of orthohantavirus genetically close to Camp Ripley virus (RLPV) were detected.</p></sec><sec><title>Conclusions</title><p>Conclusions. New data have been obtained on the distribution of genetic variants of NFIs causative agents in the S, also in the recreation areas. Genetic structure of the population of NFIs causative agents in the ST in 2016-2021 did not change significantly, which indicates the relative stability of the natural foci of NFIs in the region.</p></sec></trans-abstract><kwd-group xml:lang="ru"><kwd>молекулярно-эпидемиологический мониторинг</kwd><kwd>Francisella tularensis</kwd><kwd>Coxiella burnetii</kwd><kwd>боррелии</kwd><kwd>риккетсии группы КПЛ</kwd><kwd>природно-очаговые инфекции</kwd><kwd>Ставропольский край</kwd><kwd>вирус Крымской-Конго геморрагической лихорадки</kwd><kwd>вирус Западного Нила</kwd><kwd>ортохантавирус</kwd></kwd-group><kwd-group xml:lang="en"><kwd>Molecular surveillance</kwd><kwd>Natural Focal Diseases</kwd><kwd>Stavropol Territory</kwd><kwd>Francisella tularensis</kwd><kwd>Coxiella burnetii</kwd><kwd>Borrelia sp.</kwd><kwd>Ricckettsia sp.</kwd><kwd>Crimean-Congo hemorrhagic fever virus</kwd><kwd>West Nile Virus</kwd><kwd>Ortohantavirus</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Малецкая О. В., Прислегина Д. А., Таран Т. В. и др. Природно-очаговые вирусные лихорадки на юге европейской части России. Лихорадка Западного Нила. Проблемы особо опасных инфекций. 2020. №1. С. 109−114. https:.doi.org/10.21055/0370-1069-2020-1-109-114</mixed-citation><mixed-citation xml:lang="en">Maletskaya OV, Prislegina DA, Taran TV, et al. Natural Focal Viral Fevers in the South of European Part of Russia. West Nile Fever. Problems of Particularly Dangerous Infections. 2020;(1):109–114 (In Russ.). https:.doi.org/10.21055/0370-1069-2020-1-109-114</mixed-citation></citation-alternatives></ref><ref id="cit2"><label>2</label><citation-alternatives><mixed-citation xml:lang="ru">Малецкая О. В., Таран Т. В., Прислегина Д. А. и др. Природно-очаговые вирусные лихорадки на юге европейской части России. Крымская геморрагическая лихорадка. Проблемы особо опасных инфекций. 2020. №4. С. 75–80. https:.doi.org/10.21055/0370-1069-2020-4-75-80</mixed-citation><mixed-citation xml:lang="en">Maletskaya OV, Taran TV, Prislegina DA, et al. Natural-Focal Viral Fevers in the South of the European Part of Russia. Crimean-Congo Hemorrhagic Fever. Problems of Particularly Dangerous Infections. 2020;(4):75–80 (In Russ.). https:.doi.org/10.21055/0370-1069-2020-4-75-80</mixed-citation></citation-alternatives></ref><ref id="cit3"><label>3</label><citation-alternatives><mixed-citation xml:lang="ru">Pley C, Evans M, Lowe R, et al. Digital and technological innovation in vector-borne disease surveillance to predict, detect, and control climate-driven outbreaks. Lancet Planet Heal. 2021. Vol. 10, N5. P. e739–e745. doi:10.1016/S2542-5196(21)00141-8</mixed-citation><mixed-citation xml:lang="en">Pley C, Evans M, Lowe R, et al. Digital and technological innovation in vector-borne disease surveillance to predict, detect, and control climate-driven outbreaks. Lancet Planet Heal. 2021;10(5):e739–e745. doi:10.1016/S2542-5196(21)00141-8</mixed-citation></citation-alternatives></ref><ref id="cit4"><label>4</label><citation-alternatives><mixed-citation xml:lang="ru">Василенко Н. Ф., Прислегина Д. А., Манин Е. А. и др. Современное состояние природных очагов клещевых трансмиссивных инфекций на территории Ставропольского края. Здоровье населения и среда обитания – ЗНиСО. 2021. T. 1, №12. С. 72−78. https:.doi.org/2219-5238/2021-29-12-72-78</mixed-citation><mixed-citation xml:lang="en">Vasilenko NF, Prislegina DA, Manin EA, et al. Current Status of the Natural Foci of Tick-Borne Diseases in the Stavropol Region. Public Health and Life Environment – PH&amp;LE. 2021;1(12):72–78 (In Russ.). https:.doi.org/2219-5238/2021-29-12-72-78</mixed-citation></citation-alternatives></ref><ref id="cit5"><label>5</label><citation-alternatives><mixed-citation xml:lang="ru">Gardy JL, Loman NJ. Towards a genomics-informed, real-time, global pathogen surveillance system. Nat Rev Genet. 2018. Vol. 19, N1. P. 9–20. doi:10.1038/nrg.2017.88</mixed-citation><mixed-citation xml:lang="en">Gardy JL, Loman NJ. Towards a genomics-informed, real-time, global pathogen surveillance system. Nat Rev Genet. 2018;19(1):9–20. doi:10.1038/nrg.2017.88</mixed-citation></citation-alternatives></ref><ref id="cit6"><label>6</label><citation-alternatives><mixed-citation xml:lang="ru">Braks M, Giglio G, Tomassone L, et al. Making Vector-Borne Disease Surveillance Work: New Opportunities From the SDG Perspectives. Front Vet Sci. 2019. N6. P. 232. doi:10.3389/fvets.2019.00232</mixed-citation><mixed-citation xml:lang="en">Braks M, Giglio G, Tomassone L, et al. Making Vector-Borne Disease Surveillance Work: New Opportunities From the SDG Perspectives. Front Vet Sci. 2019;(6):232. doi:10.3389/fvets.2019.00232</mixed-citation></citation-alternatives></ref><ref id="cit7"><label>7</label><citation-alternatives><mixed-citation xml:lang="ru">Ciccozzi M, Lai A, Zehender G, et al. The phylogenetic approach for viral infectious disease evolution and epidemiology: An updating review. J Med Virol. 2019. Vol. 91, N10. P. 1707–1724. doi:10.1002/jmv.25526</mixed-citation><mixed-citation xml:lang="en">Ciccozzi M, Lai A, Zehender G, et al. The phylogenetic approach for viral infectious disease evolution and epidemiology: An updating review. J Med Virol. 2019;91(10):1707– 1724. doi:10.1002/jmv.25526</mixed-citation></citation-alternatives></ref><ref id="cit8"><label>8</label><citation-alternatives><mixed-citation xml:lang="ru">Mediannikov O, Diatta G, Fenollar F, et al. Tick-borne rickettsioses, neglected emerging diseases in rural Senegal. PLoS Negl. Trop. Dis. 2010. N4. P. e821. doi:10.1371/journal.pntd.0000821</mixed-citation><mixed-citation xml:lang="en">Mediannikov O, Diatta G, Fenollar F, et al. Tick-borne rickettsioses, neglected emerging diseases in rural Senegal. PLoS Negl. Trop. Dis. 2010;(4):e821. doi:10.1371/journal.pntd.0000821</mixed-citation></citation-alternatives></ref><ref id="cit9"><label>9</label><citation-alternatives><mixed-citation xml:lang="ru">Klempa B, Fichet-Calvet E, Lecompte E, et al. Hantavirus in African Wood Mouse, Guinea. Emerging Infectious Diseases. 2006. Vol. 12, N5. P. 838–840. doi:10.3201/eid1205.051487</mixed-citation><mixed-citation xml:lang="en">Klempa B, Fichet-Calvet E, Lecompte E, et al. Hantavirus in African Wood Mouse, Guinea. Emerging Infectious Diseases. 2006;12(5):838–840. doi:10.3201/eid1205.051487.</mixed-citation></citation-alternatives></ref><ref id="cit10"><label>10</label><citation-alternatives><mixed-citation xml:lang="ru">Johansson A, Farlow J, Larsson P, et al. Worldwide Genetic Relationships among Francisella tularensis Isolates Determined by Multiple-Locus Variable-Number Tandem Repeat Analysis. J. Bacteriol. 2004. Vol. 186, N17. P. 5808–5818</mixed-citation><mixed-citation xml:lang="en">Johansson A, Farlow J, Larsson P., et al. Worldwide Genetic Relationships among Francisella tularensis Isolates Determined by Multiple-Locus Variable-Number Tandem Repeat Analysis. J. Bacteriol. 2004;186(17):5808–5818</mixed-citation></citation-alternatives></ref><ref id="cit11"><label>11</label><citation-alternatives><mixed-citation xml:lang="ru">MLVAnet support site [Internet]. Coxiella burnetii 2014 cooperative database. Доступно на: http:.mlva.u-psud.fr/mlvanet/spip.php?rubrique50 Ссылка активна на 24 августа 2022.</mixed-citation><mixed-citation xml:lang="en">MLVAnet support site [Internet]. Coxiella burnetii 2014 cooperative database. Available at: http:.mlva.u-psud.fr/mlvanet/spip.php?rubrique50 Assessed: 24 Aug 2022.</mixed-citation></citation-alternatives></ref><ref id="cit12"><label>12</label><citation-alternatives><mixed-citation xml:lang="ru">Yin X, Guo S, Ding C, et al. Spotted Fever Group Rickettsiae in Inner Mongolia, China, 2015–2016. Emerg Infect Dis. 2018. Vol. 24, N11. P. 2105−2107. doi: 10.3201/eid2411.162094</mixed-citation><mixed-citation xml:lang="en">Yin X, Guo S, Ding C, et al. Spotted Fever Group Rickettsiae in Inner Mongolia, China, 2015–2016. Emerg Infect Dis. 2018;24(11):2105–2107. doi:10.3201/eid2411.162094</mixed-citation></citation-alternatives></ref><ref id="cit13"><label>13</label><citation-alternatives><mixed-citation xml:lang="ru">Wijnveld M, Shhotta A-M, Pinter A, et al. Novel Rickettsia raoultii strain isolated and propagated from Austrian Dermacentor reticulatus ticks. Parasites &amp; Vectors. 2016. N9. P. 567. doi:10.1186/s13071-016-1858-x</mixed-citation><mixed-citation xml:lang="en">Wijnveld M, Shhotta A-M, Pinter A, et al. Novel Rickettsia raoultii strain isolated and propagated from Austrian Dermacentor reticulatus ticks. Parasites &amp; Vectors. 2016;(9):567. doi:10.1186/s13071-016-1858-x</mixed-citation></citation-alternatives></ref><ref id="cit14"><label>14</label><citation-alternatives><mixed-citation xml:lang="ru">Fukunaga M, Hamase A, Okada K, et al. Characterization of spirochetes isolated from ticks (Ixodes tanuki, Ixodes turdus, and Ixodes columnae) and comparison of the sequences with those of Borrelia burgdorferi sensu lato strains . Appl. Environ. Microbiol. 1996. Vol. 62, N7. P. 2338−2344. DOI: 10.1128/aem.62.7.2338-2344.1996</mixed-citation><mixed-citation xml:lang="en">Fukunaga M, Hamase A, Okada K, et al. Characterization of spirochetes isolated from ticks (Ixodes tanuki, Ixodes turdus, and Ixodes columnae) and comparison of the sequences with those of Borrelia burgdorferi sensu lato strains. Appl. Environ. Microbiol. 1996;62(7);2338–2344. DOI: 10.1128/aem.62.7.2338-2344.1996</mixed-citation></citation-alternatives></ref><ref id="cit15"><label>15</label><citation-alternatives><mixed-citation xml:lang="ru">Куличенко А. Н., Волынкина А. С., Котенев Е. С. и др. Новый генетический вариант вируса Крымской-Конго геморрагической лихорадки, выявленный в Крыму. Молекулярная генетика, микробиология и вирусология. 2016. Т. 34, №2. С. 76−80.</mixed-citation><mixed-citation xml:lang="en">Kulichenko AN, Volynkina AS, Kotenev ES., et al. Novyy geneticheskiy variant virusa Krymskoy-Kongo gemorragicheskoy likhoradki, vyyavlennyy v Krymu. Molecular Genetics, Microbiology and Virology. 2016;34(2):76–80 (In Russ.).</mixed-citation></citation-alternatives></ref><ref id="cit16"><label>16</label><citation-alternatives><mixed-citation xml:lang="ru">Платонов А. Е., Карань Л. С., Шопенская Т. А. и др. Генотипирование штаммов вируса лихорадки Западного Нила, циркулирующих на юге России, как метод эпидемиологического расследования: принципы и результаты. Журнал микробиологии, эпидемиологии и иммунобиологии. 2011. Т. 88, №2. С. 29−37.</mixed-citation><mixed-citation xml:lang="en">Platonov AE, Karan LS, Shopenskaya TA, и др. Genotipirovaniye shtammov virusa likhoradki Zapadnogo Nila, tsirkuliruyushchikh na yuge Rossii, kak metod epidemiologicheskogo rassledovaniya: printsipy i rezul’taty. Zh. Mikrobiol. (Moscow), 2011;88(2):29–37 (In Russ.).</mixed-citation></citation-alternatives></ref><ref id="cit17"><label>17</label><citation-alternatives><mixed-citation xml:lang="ru">Тимофеев В. С., Кудрявцева Т. Ю., Мокриевич А. Н. и др. Молекулярное типирование штаммов Francisella tularensis методом мультилокусного анализа вариабельности числа тандемных повторов. Молекулярная генетика, микробиология и вирусология. 2014. № 1. С.8−15.</mixed-citation><mixed-citation xml:lang="en">Timofeyev V. S., Kudryavtseva T. Yu., Mokriyevich A. N, et al. Molekulyarnoye tipirovaniye shtammov Francisella tularensis metodom mul’tilokusnogo analiza variabel’nosti chisla tandemnykh povtorov. Molecular Genetics, Microbiology and Virology. 2014;1:8–15.</mixed-citation></citation-alternatives></ref><ref id="cit18"><label>18</label><citation-alternatives><mixed-citation xml:lang="ru">Власов В. В., Иголкина Я. П., Рар В. А. и др. Клещевые риккетсиозы в Западной Сибири. Первыt Российские случаи риккетсиозов, вызванных Rickettsia aeshlimannii, Rickettsia raoultii и Rockettsia slovaca. Национальные приоритеты России. 2021. T. 42, №3. С. 122−126.</mixed-citation><mixed-citation xml:lang="en">Vlasov VV, Igolkina YAP, Rar VA., et al. Kleshchevyye rikketsiozy v Zapadnoy Sibiri. Pervyt Rossiyskiye sluchai rikketsiozov, vyzvannykh Rickettsia aeshlimannii, Rickettsia raoultii i Rockettsia slovaca. Natsional’nyye prioritety Rossii. 2021; T 42 (3):122–26. (In Russ)</mixed-citation></citation-alternatives></ref><ref id="cit19"><label>19</label><citation-alternatives><mixed-citation xml:lang="ru">Fournier PE, Grunnenberger F, Jaulhac B, et al. Evidence of Rickettsia helvetica infection in humans, eastern France. Emerg Infect Dis. 2000. N6. P. 389−392. doi:10.3201/eid0604.000412</mixed-citation><mixed-citation xml:lang="en">Fournier PE, Grunnenberger F, Jaulhac B, et al. Evidence of Rickettsia helvetica infection in humans, eastern France. Emerg Infect Dis. 2000;6:389-92. doi:10.3201/eid0604.000412</mixed-citation></citation-alternatives></ref><ref id="cit20"><label>20</label><citation-alternatives><mixed-citation xml:lang="ru">Vitale G, Mansuelo S, Rolain JM, et al. Rickettsia massiliae Human Isolation. Emerg Infect Dis. 2006. N12. P. 174−175. doi:10.3201/eid1201.050850</mixed-citation><mixed-citation xml:lang="en">Vitale G, Mansuelo S, Rolain JM, et al. Rickettsia massiliae Human Isolation. Emerg Infect Dis. 2006;12:174–75. doi:10.3201/eid1201.050850</mixed-citation></citation-alternatives></ref><ref id="cit21"><label>21</label><citation-alternatives><mixed-citation xml:lang="ru">Коренберг Э. И., Нефедова В. В., Фадеева И. А., Горелова Н. Б. Основные итоги генотипирования боррелий в России. Бюллетень сибирской медицины. 2006. №5. С.87−92. https:.doi.org/10.20538/1682-0363-2006--87-92</mixed-citation><mixed-citation xml:lang="en">Korenberg EI., Nefedova VV., Fadeyeva IA, et al. Principal results of Borrelia genotyping in Russia. Bulletin of Siberian Medicine. 2006;5:87–92. (In Russ.) https:.doi.org/10.20538/1682-0363-2006--87-92</mixed-citation></citation-alternatives></ref><ref id="cit22"><label>22</label><citation-alternatives><mixed-citation xml:lang="ru">Platonov AE, Karan LS, Kolyasnikova NM, et al. Humans infected with relapsing fever spirochete Borrelia miyamotoi, Russia. Emerg. Infect. Dis. 2011. N17, P. 1816−1822.</mixed-citation><mixed-citation xml:lang="en">Platonov AE, Karan LS., Kolyasnikova NM, et al. Humans infected with relapsing fever spirochete Borrelia miyamotoi, Russia. Emerg. Infect. Dis. 2011;17:1816-22.</mixed-citation></citation-alternatives></ref><ref id="cit23"><label>23</label><citation-alternatives><mixed-citation xml:lang="ru">Крымская геморрагическая лихорадка. Онищенко Г. Г., Куличенко А. Н., ред.: Воронеж. ООО «Фаворит», 2018. 288c.</mixed-citation><mixed-citation xml:lang="en">Krymskaya gemorragicheskaya likhoradka. Ed: Onishchenko GG, Kulichenko AN.: Voronezh: OOO «Favorit»; 2018:288 (In Russ).</mixed-citation></citation-alternatives></ref><ref id="cit24"><label>24</label><citation-alternatives><mixed-citation xml:lang="ru">Chinikar S, Bouzari S, Shokrgozar MA, et al. Genetic Diversity of Crimean Congo Hemorrhagic Fever Virus Strains from Iran. J Arthropod Borne Dis. 2016. Vol.10. N2. P. 127−140.</mixed-citation><mixed-citation xml:lang="en">Chinikar S, Bouzari S, Shokrgozar MA, et al. Genetic Diversity of Crimean Congo Hemorrhagic Fever Virus Strains from Iran. J Arthropod Borne Dis. 2016;10(2):127–40.</mixed-citation></citation-alternatives></ref><ref id="cit25"><label>25</label><citation-alternatives><mixed-citation xml:lang="ru">Plyusnin A, Vapalahti O, Lankinen H, et al. Tula virus: a newly detected hantavirus carried by European common voles. J. Virol. 1994. №.68. p. 7833−9.</mixed-citation><mixed-citation xml:lang="en">Plyusnin A, Vapalahti O, Lankinen H, et al. Tula virus: a newly detected hantavirus carried by European common voles . J. Virol. 1994. №.68. p. 7833–9.</mixed-citation></citation-alternatives></ref><ref id="cit26"><label>26</label><citation-alternatives><mixed-citation xml:lang="ru">Яшина Л. Н., Зайковская А. В., Протопопова Е. В. и др. Хантавирус Тула на территории Крыма. Молекулярная генетика, микробиология и вирусология. 2015. Т. 33, № 4. С. 38−40.</mixed-citation><mixed-citation xml:lang="en">Yashina LN, Zaykovskaya AV, Protopopova YeV, et al. Khantavirus Tula na territorii Kryma. Molekulyarnaya genetika, mikrobiologiya i virusologiya. 2015; 33 (4): 38–40 (In Russ).</mixed-citation></citation-alternatives></ref><ref id="cit27"><label>27</label><citation-alternatives><mixed-citation xml:lang="ru">Якименко В. В., Гаранина С. Б., Малькова М. Г. и др. Итоги изучения хантавирусов в Западной Сибири. Тихоокеанский медицинский журнал. 2008. № 2. С. 20−6.</mixed-citation><mixed-citation xml:lang="en">Yakimenko VV, Garanina SB, Malkova MG. et al. Results of hantavirus studying in Western Siberia. Pacific Medical Journal. 2008. No. 2. S. 20–6.</mixed-citation></citation-alternatives></ref><ref id="cit28"><label>28</label><citation-alternatives><mixed-citation xml:lang="ru">Hofmann J, Kramer S, Herrlinger KR, et al. Tula Virus as Causative Agent of Hantavirus Disease in Immunocompetent Person, Germany. Emerg Infect Dis. 2021. Vol. 27, N4. P. 1234–1237. doi:10.3201/eid2704.203996</mixed-citation><mixed-citation xml:lang="en">Hofmann J, Kramer S, Herrlinger KR, et al. Tula Virus as Causative Agent of Hantavirus Disease in Immunocompetent Person, Germany. Emerg Infect Dis. 2021;27(4):1234–37. doi:10.3201/eid2704.203996</mixed-citation></citation-alternatives></ref><ref id="cit29"><label>29</label><citation-alternatives><mixed-citation xml:lang="ru">Schmidt-Chanasit J, Essbauer S, Petraityte R, et al. Extensive host sharing of central European Tula virus . J. Virol. 2010. Vol. 84. P. 459−474. doi:10.1128/JVI.01226-09</mixed-citation><mixed-citation xml:lang="en">Schmidt-Chanasit J, Essbauer S, Petraityte R, et al. Extensive host sharing of central European Tula virus. J. Virol. 2010; 84: 459–74. doi:10.1128/JVI.01226-09</mixed-citation></citation-alternatives></ref><ref id="cit30"><label>30</label><citation-alternatives><mixed-citation xml:lang="ru">Bennett SN, Gu SH, Kang HJ, et al. Reconstructing the evolutionary origins and phylogeography of hantaviruses. Trends Microbiol. 2014. Vol. 22, N8. P.473−482. doi:10.1016/j.tim.2014.04.008</mixed-citation><mixed-citation xml:lang="en">Bennett SN, Gu SH, Kang HJ, et al. Reconstructing the evolutionary origins and phylogeography of hantaviruses. Trends Microbiol. 2014;22(8):473–82. doi:10.1016/j.tim.2014.04.008</mixed-citation></citation-alternatives></ref><ref id="cit31"><label>31</label><citation-alternatives><mixed-citation xml:lang="ru">Батурин А. А., Ткаченко Г. А., Леденева М. Л. и др. Молекулярно-генетический анализ вариантов вируса Западного Нила, циркулирующих на европейской части России в 2010–2019 гг. Журнал микробиологии, эпидемиологии и иммунобиологии. 2021. Т. 98, №3. С.308−318 https:.doi.org/10.36233/0372-9311-85</mixed-citation><mixed-citation xml:lang="en">Baturin AA., Tkachenko GA., Ledeneva ML, et al. Molekulyarno-geneticheskiy analiz variantov virusa Zapadnogo Nila, tsirkuliruyushchikh na yevropeyskoy chasti Rossii v 2010 –2019 gg. Zhurnal mikrobiologii, epidemiologii i immunobiologii. 2021; 98 (3) С.308–18 (In Russ). https:doi:org/10.36233/0372-9311-85</mixed-citation></citation-alternatives></ref></ref-list><fn-group><fn fn-type="conflict"><p>The authors declare that there are no conflicts of interest present.</p></fn></fn-group></back></article>
