Preview

Epidemiology and Vaccinal Prevention

Advanced search

The Occurrence of Genetic Recombination between Viruses and Human, it's Possible Influence on Vaccination

https://doi.org/10.31631/2073-3046-2019-18-4-14

Abstract

Relevance. The genetic recombination between viruses and men is known long ago. It can be divided on relict and ontogenic ones. For the host the recombination may display different consequences the nature of which is not exposed explicitly.

Aim is to analyze (on the base of computer comparison of the primary structure of viral and human proteins ) the occurrence of twodirectional recombination by small genome fragments between viruses and men and describe its possible after-effects.

Materials and methods. For this computer study human and virus protein sequences were used from data bases available in INTERNET.

Results. It was indicated that recombination (cryptical and explicit) by small genome fragments between viruses and men occurred many times in the past and many viruses pathogenic for men were involved in it.

Conclusion. The bioinformatics approach allows to look at the past of viruses and men and find the traces of genetic information changes between them that may predetermine the effects of vaccines and diagnostic immune tests.

About the Author

E. P. Kharchenko
Sechenov Institute of Evolutionary Physiology and Biochemistry, Russian Academy of Sciences
Russian Federation

Eugene P. Kharchenko, Dr. Sci. (Biol.), leader researcher

44 Toreza pr., St. Petersburg, Russian Federation, 194223

+7 (812) 552-70-31



References

1. Johnson WE. Endogenous Retroviruses in the Genomics Era. Annu. Rev. Virol. 2015; 2: 135–159. doi: 10.1146/annurev-virology-100114-054945.

2. Jachiet PA, Colson P, Lopez P, Bapteste E. Extensive gene remodeling in the viral world: new evidence for nongradual evolution in the mobilome network. Genome Biol. Evol. 2014; 6 (9); 2195–2205. doi:10.1093/gbe/evu168

3. Stedman KM. Deep Recombination: RNA and ssDNA Virus Genes in DNA Virus and Host Genomes. Annu. Rev. Virol. 2015; 2: 203–217. doi: 10.1146/annurev-virology-100114-055127.

4. Georgiades K, Raoult D. How microbiology helps define the rhizome of life. Front Cell Infect Microbiol. 2012; 2: 60. doi: 10.3389/fcimb.2012.00060.

5. Katzourakis A, Gifford RJ. Endogenous Viral Elements in Animal Genomes. PLoS Genet. 2010; 6 (11): e1001191. doi:10.1371/journal.pgen.1001191.

6. Belyi VA, Levine AJ, Skalka AM. Unexpected inheritance: multiple integrations of ancient Bornavirus and Ebolavirus/Marburgvirus sequences in vertebrate genomes. PLOS Pathog. 2010; 6 (7): e1001030. doi: 10.1371/journal.ppat.1001030.

7. Suntsova M, Garazha A, Ivanova A et al. Molecular functions of human endogenous retroviruses in health and disease. Cell. Mol. Life Sci. 2015; 72: 3653–3675. DOI: 10.1007/s00018-015-1947-6.

8. Fu M, Denga R, Wang J, Wang X. Detection and analysis of horizontal gene transfer in herpesvirus. Virus Res. 2008; 131: 65–76.DOI:10.1016/j.virusres.2007.08.009.

9. Holzerlandt R, Orengo C, Kellam P, Alba MM. Identification of new herpesvirus gene homologs in the human genome. Genome Res. 2002; 12: 1739–1748. DOI: 10.1101/gr.334302.

10. Barrangou R. CRISPR-Cas systems and RNA-guided interference. Wiley Interdiscip Rev RNA. 2013; 4 (3): 267–78. doi:10.1002/wrna.1159.

11. Charpentier E, Richter H, van der Oost J. White M.F. Biogenesis pathways of RNA guides in archaeal and bacterial CRISPR-Cas adaptive immunity. FEMS Microbiology Reviews. 2015; 39 (3): 428–441. doi: 10.1093/femsre/fuv023.

12. Khatchikian D, Orlich M, Rott R. Increased viral pathogenicity after insertion of a 28S ribosomal RNA sequence into the haemagglutinin gene of an influenza virus. Nature. 1989; 340 (6229): 156–157. DOI: 10.1038/340156a0.

13. Romanova LI, Blinov VM, Tolskaya EA et al. The primary structure of crossover regions of intertypic poliovirus recombinants: a model of recombination between RNA genomes. Virology. 1986; 155 (1): 202–213.

14. Kharchenko EP. Immune epitope continuum of the protein relationships, poly- and autoreactivity of antibodies. Medical Immunology (Russia). 2015; 17 (4): 335–346 (In Russ.). doi: 10.15789/1563-0625-2015-4-335-346 .

15. Kharchenko EP. The possible collisions in virus infection immunodiagnostics and vaccination. Russian Journal of Infection and Immunity. 2016; 6 (2): 157–164 (In Russ.). doi: 10.15789/2220-7619-2016-2-157-164 .

16. Keele BF, Giorgi EE, Salazar-Gonzalez JF et al. Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection. Proc Natl Acad Sci USA. 2008; 105: 7552–7557. doi: 10.1073/pnas.0802203105.

17. Kharchenko EP. Immune privilege: pathological aspect. Immunology . 2009; 30 (4): 249–255 (In Russ.)

18. Gale MJr, Foy EM. Evasion of intracellular host defence by hepatitis C virus. Nature. 2005; 436: 939–945.

19. Lloyd AR, Jagger E, Post JJ et al. Host and viral factors in the immunopathogenesis of primary hepatitis C virus infection. Immunology and Cell Biology. 2007; 85: 24–32.

20. Rehermann B, Nascimbeni M. Immunology of hepatitis b virus and hepatitis c virus infection. Nature Reviews Immunology. 2005; 5: 215–229.

21. Prigogine IR, Stengers I. Order out of chaos. Moscow. Progress 1986: 432.

22. Traylen CM, Patel HR, Fondaw W. et al. Virus reactivation: a panoramic view in human infections. Future Virol. 2011; 6 (4): 451–463. DOI: 10.2217/fvl.11.21.

23. Koonin EV, Doljab VV, Krupovic M. Origins and evolution of viruses of eukaryotes: The ultimate modularity. Virology. 2015; 479–480: 2–25. doi.org/10.1016/j.virol.2015.02.039.

24. Krupovic M, Zhi N, Li J, Hu G et al. Multiple layers of chimerism in a single-stranded DNA virus discovered by deep sequencing. Genome Biol Evol. 2015; 7 (4): 993–1001. doi: 10.1093/gbe/evv034.

25. Krupovic M, Forterre P. Single-stranded DNA viruses employ a variety of mechanisms for integration into host genomes. Ann NY Acad Sci. 2015; 134: 41–53. doi: 10.1111/nyas.12675.

26. Kharchenko EP. Occurrence of small homologous and complementary fragments in human virus genomes and their possible role. Russian Journal of Infection and Immunity, 2017; 7 (4): 393–404 (In Russ.). doi: 10.15789/2220-7619-2017-4-393-404.


Review

For citations:


Kharchenko E.P. The Occurrence of Genetic Recombination between Viruses and Human, it's Possible Influence on Vaccination. Epidemiology and Vaccinal Prevention. 2019;18(6):4-14. (In Russ.) https://doi.org/10.31631/2073-3046-2019-18-4-14

Views: 1235


Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.


ISSN 2073-3046 (Print)
ISSN 2619-0494 (Online)